Protein Crystallography

Protein structure determination using X-ray crystallography

Protein crystallography is a method of X-ray crystallography specifically applied to proteins. It allows us to understand a protein’s shape, function, and interactions by analyzing how X-rays diffract through a crystal of the protein.

  1. Protein purification – The protein of interest is isolated in a pure form.
  2. Crystallization – The protein is induced to form a regular crystal lattice (often the most challenging step).
  3. X-ray diffraction – Crystals are bombarded with X-rays, which scatter based on the arrangement of atoms.
  4. Data collection and analysis – The diffraction pattern is recorded and used to calculate an electron density map.
  5. Model building and Structure Determination – A model of the protein structure is constructed to best fit the electron density data.

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diagram of protein crystallisation workflow

  • Users can bring their purified sample to the facility and screen for suitable crystallisation conditions (several commercially available screens are available in 96-well format).
  • Users will be trained in the use of the liquid handling robot Mosquito.
  • Support with condition optimisation, screening and checking for potential hits.
  • Assistance with Cryo-protection and freezing of crystals.
  • Crystals are shipped to Diamond Light Source, the national synchrotron facility in Didcot, Oxford for data collection.
  • Experienced users can remotely collect their own data, otherwise support can be provided.
  • Help with different crystallography software suites such as CCP4 and Phenix, and visualisation software such as COOT and PyMOL. 

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Image of Mosquito Xtal3 workstation

Screening for hundreds of conditions can be carried out with as little as ~100 ul of purified protein at the appropriate concentration, however in most cases ~250 ul is recommended.


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