The EGF works on a wide range of exciting research projects as well as innovating in lab automations.
2025
- Vegh P., Chapman E., Gilmour C., Fragkoudis R. (2025) Modular DNA Construct Design for High-Throughput Golden Gate Assembly. Methods in Molecular Biology, vol 2850:61-77. DOI: 10.1007/978-1-0716-4220-7_4
2024
- Vegh P., Donovan S., Rosser S., Stracquadanio G., Fragkoudis R. (2024) Biofoundry-Scale DNA Assembly Validation Using Cost-Effective High-Throughput Long-Read Sequencing. ACS Synth Biol Feb 16;13(2):683-686. DOI: 10.1021/acssynbio.3c00589
2022
- Koray Malci, Emma Watts, Tania Michelle Roberts, Jamie Yam Auxillos, Behnaz Nowrouzi, Heloísa Oss Boll, Cibele Zolnier Sousa do Nascimento, Andreas Andreou, Peter Vegh, Sophie Donovan, Rennos Fragkoudis, Sven Panke, Edward Wallace, Alistair Elfick, Leonardo Rios-Solis. (2022) Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species. ACS Synth Biol. Aug 19;11(8):2527-2547. DOI: 10.1021/acssynbio.1c00442
- Hérisson J., Duigou T., du Lac M., Bazi-Kabbaj K., Sabeti Azad M., Buldum G., Telle O., El Moubayed Y., Carbonell P., Swainston N., Zulkower V., Kushwaha M., Baldwin GS., Faulon JL (2021) The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering. Nature Communications, 13(1) 5082 DOI: 10.1038/s41467-022-32661-x
2021
- Stracquadanio G., Zulkower V. (2021) Computer Aided Assembly and Verification of Synthetic Chromosomes. In: Marchisio M.A. (eds) Computational Methods in Synthetic Biology. Methods in Molecular Biology, vol 2189. DOI: 10.1007/978-1-0716-0822-7_13
- Gaeta A., Zulkower V., Stracquadanio G. (2021) Design and assembly of DNA molecules using multi-objective optimization. Synthetic Biology (Oxf) 6(1), 1–9 DOI: 10.1093/synbio/ysab026
- Zulkower V. (2021) Computer-Aided Design and Pre-validation of Large Batches of DNA Assemblies.Methods in Molecular Biology, vol 2229:157-166. DOI:10.1007/978-1-0716-1032-9_6
- Zulkower V. (2021) Computer-Aided Planning for the Verification of Large Batches of DNA Constructs. Methods in Molecular Biology, vol 2229:167-174. DOI: 10.1007/978-1-0716-1032-9_7
- Gilman J., Zulkower V., Menolascina F. (2021) Using a Design of Experiments Approach to Inform the Design of Hybrid Synthetic Yeast Promoters. Computational Methods in Synthetic Biology, 2189:1-17. DOI:10.1007/978-1-0716-0822-7_1
2020
- Doçi G, Fuchs L., Kharbanda Y., Schickling P., Zulkower V., Hillson N., Oberortner E., Swainston N., Kabisch J. (2020) DNA Scanner: a web application for comparing DNA synthesis feasibility, price and turnaround time across vendors, Synthetic Biology, Volume 5, Issue 1, 2020. DOI: 10.1093/synbio/ysaa011
- Fragkoudis, R and Pantidos, N (2020) Fighting a global pandemic with an army of robots, Cell & Gene Therapy Insights 6(7), 865–870. DOI: 10.18609/cgti.2020.097
- Zulkower V and Rosser S. (2020) DNA Chisel, a versatile sequence optimiser. Bioinformatics 36(16):4508-4509 DOI: 10.1093/bioinformatics/btaa558
- Zulkower V and Rosser S. (2020) DNA Features Viewer, a sequence annotations formatting and plotting library for Python. Bioinformatics 36(15):4350-4352 DOI: 10.1093/bioinformatics/btaa213
2019
- Hillson, N., et al. (2019) Building a global alliance of biofoundries. Nat. Comms. 10(1): 2040. DOI: 10.1038/s41467-019-10079-2
- Vasudevan R et al. (2019) CyanoGate: A Golden Gate modular cloning suite for engineering cyanobacteria based on the plant MoClo syntax. Plant Physiology. DOI: 10.1104/pp.18.01401
2017
- Bates, M., Lachoff, J., Meech, D., Zulkower, V., Moisy, A., Luo, Y., et al. (2017). ‘Genetic Constructor: An Online DNA Design Platform’. ACS Synthetic Biology 2017 Dec 15; 6(12): 2362-2365. DOI: 10.1021/acssynbio.7b00236
- Martella, A., et al. (2017) EMMA: An Extensible Mammalian Modular Assembly Toolkit for the Rapid Design and Production of Diverse Expression Vectors.’ ACS Synthetic Biology, 6(7) pp. 1380 - 1392. DOI: 10.1021/acssynbio.7b00016
2016
- Kanigowska, P et al. (2016) Smart DNA Fabrication Using Sound Waves: Applying Acoustic Dispensing Technologies to Synthetic Biology. Journal of Laboratory Automation Vol. 21(1) 49 –56. DOI: 10.1177/2211068215593754