Software written with our partners. Combining Algal and Plant Photosynthesis (CAPP) data Image data of pyrenoids in Chlamydomonas and proto-pyrenoid condensates in higher plant chloroplasts.Supporting data for Atkinson et al. (2020): 'Condensation of Rubisco into a proto-pyrenoid in higher plant chloroplasts'. Plant phenotyping tools PS-Plant software Installation guidance is provided in a YouTube tutorial. Photometric stereo training data set with annotated leaf masks Photomeric stereo training data set with annontated leaf masks. Photomeric stereo test data set Photomeric stereo test data set. Supporting data for Bernotas, Scorza et al. (2019): 'A photometric stereo-based 3D imaging system using computer vision and deep learning for tracking plant growth.' Supplementary files and software protocol can be download here, which includes a video guide for setting up PS-Plant. Additional link to the GigaScience Database iDIEL Plant software and image capture system design.Software source code and datasets for Dobrescu et al. (2017): 'A "Do-It-Yourself" phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants.' Cyanobacteria: synthetic biology tools Find Alistair McCormick Lab Plasmids The Alistair McCormick Lab has deposited materials at Addgene for distribution to the research community. Addgene is a nonprofit plasmid repository dedicated to improving life science research. The CyanoGate toolkit(Kit #1000000146) Our CyanoGate plasmids are also available under:McCormick Lab Plasmidsfrom Vasudevan et al. (2019): 'CyanoGate: A Golden Gate modular cloning suite for engineering cyanobacteria based on the plant MoClo syntax.'from Gale et al. (2019): 'Modification of cyanobacteria by conjugation using the CyanoGate modular cloning toolkit.' The Edinburgh Genome Foundry's Collection of Useful Biological Apps (CUBA). The Software Suite of the Edinburgh Genome Foundry (GitHub repository). Genetic Modification of Cyanobacteria by Conjugation Using the CyanoGate Modular Cloning Toolkit Here, we present a protocol describing how to i) assemble a self-replicating vector using the CyanoGate modular cloning toolkit, ii) introduce the vector into a cyanobacterial host by conjugation, and iii) characterize transgenic cyanobacteria strains using a plate reader or flow cytometry. This article was published on 2025-06-02
