Publications

Computational design of Periplasmic binding protein biosensors guided by molecular dynamics

O'Shea, J. M., Doerner, P., Richardson, A. & Wood, C. W., 17 Jun 2024, In: PLoS Computational Biology. 20, 6, 13 p., e1012212.

Affordable and robust phenotyping framework to analyse root system architecture of soil-grown plants

Bontpart, T., Concha Vidal, C., Giuffrida, M. V., Robertson, I., Admkie, K., Degefu, T., Girma, N., Tesfaye, K., Haileselassie, T., Fikre, A., Fetene, M., Tsaftaris, S. & Doerner, P., 14 Sept 2020, In: The Plant Journal. 103, 6, p. 2330-2343 14 p.

Extreme environments: Crucibles of potent abiotic stress tolerance

Doerner, P., 26 Jun 2020, In: Journal of Experimental Botany. 71, 13, p. 3761-3764

The impact of the rhizobia–legume symbiosis on host root system architecture

Concha Vidal, C. & Doerner, P., 26 Jun 2020, In: Journal of Experimental Botany. 71, 13, p. 3902–3921 20 p.

Adversarial Large-Scale Root Gap Inpainting

Chen, H., Valerio Giuffrida, M., Doerner, P. & Tsaftaris, S. A., 20 Jun 2019, The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops. Computer Vision Foundation

Leaf Counting Without Annotations Using Adversarial Unsupervised Domain Adaptation

Valerio Giuffrida, M., Dobrescu, A., Doerner, P. & Tsaftaris, S. A., 20 Jun 2019, The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops. Computer Vision Foundation

Inducible reporter/driver lines for the Arabidopsis root with intrinsic reporting of activity state

Machin, F. Q., Beckers, M., Tian, X., Fairnie, A., Cheng, T., Scheible, W.-R. & Doerner, P., 1 Apr 2019, In: The Plant Journal. 98, 1, p. 153-164 12 p.

Blind Inpainting of Large-scale Masks of Thin Structures with Adversarial and Reinforcement Learning

Chen, H., Giuffrida, M. V., Doerner, P. & Tsaftaris, S. A., 2019, ArXiv, (arxiv preprint).

Root Gap Correction with a Deep Inpainting Model

Chen, H., Giuffrida, M., Doerner, P. & Tsaftaris, S., 6 Sept 2018. Contribution to conference

Pheno-Deep Counter: a unified and versatile deep learning architecture for leaf counting

Giuffrida, M., Doerner, P. & Tsaftaris, S., 12 Aug 2018, (E-pub ahead of print) In: The Plant Journal. 11 p.

The Phosphate Fast-Responsive Genes PECP1 and PPsPase1 Affect Phosphocholine and Phosphoethanolamine Content

Hanchi, M., Thibaud, M.-C., Légeret, B., Kuwata, K., Pochon, N., Beisson, F., Cao, A., Cuyas, L., David, P., Doerner, P., Ferjani, A., Lai, F., Li-Beisson, Y., Mutterer, J., Philibert, M., Raghothama, K. G., Rivasseau, C., Secco, D., Whelan, J. & Nussaume, L. & 1 others, , 1 Apr 2018, In: Plant physiology. 176, 4, p. 2943-2962 20 p.

Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm

Pacheco-Escobedo, M., Ivanov, V., Ransom-Rodríguez, I., Arriaga-Mejía, G., Ávila, H., Baklanov, I., Pimentel, A., Corkidi, G., Doerner, P., Dubrovsky, J., Álvarez-Buylla, E. & Garay-Arroyo, A., 7 Jan 2017, In: Annals of Botany. 14 p.

The plant specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis

Weimer, A. K., Biedermann, S., Harashima, H., Roodbarkelari, F., Takahashi, N., Foreman, J., Guan, Y., Pochon, G., Heese, M., Van Damme, D., Sugimoto, K., Koncz, C., Doerner, P., Umeda, M. & Schnittger, A., 4 Oct 2016, In: EMBO Journal. 35, 19, p. 2068-2086 19 p.

Root resource foraging: Does it matter?

Tian, X. & Doerner, P., 12 Aug 2013, In: Frontiers in plant science. 4, p. 303

Genetic and molecular basis of nonhost disease resistance: complex, yes; silver bullet, no

Fan, J. & Doerner, P., Aug 2012, In: Current Opinion in Plant Biology. 15, 4, p. 400-406 7 p.

Pseudomonas sax Genes Overcome Aliphatic Isothiocyanate-Mediated Non-Host Resistance in Arabidopsis

Fan, J., Crooks, C., Creissen, G., Hill, L., Fairhurst, S., Doerner, P. & Lamb, C., 4 Mar 2011, In: Science. 331, 6021, p. 1185-1188 4 p.

Plant Development: Confused Root Cells Have Mixed Identity in SCHIZORIZA

Doerner, P., 9 Mar 2010, In: Current Biology. 20, 5, p. R246-R248 3 p.

Abscisic Acid Has a Key Role in Modulating Diverse Plant-Pathogen Interactions

Fan, J., Hill, L., Crooks, C., Doerner, P. & Lamb, C., Aug 2009, In: Plant physiology. 150, 4, p. 1750-1761 12 p.

Gibberellin Signaling in the Endodermis Controls Arabidopsis Root Meristem Size

Ubeda-Tomas, S., Federici, F., Casimiro, I., Beemster, G. T. S., Bhalerao, R., Swarup, R., Doerner, P., Haseloff, J. & Bennett, M. J., 28 Jul 2009, In: Current Biology. 19, 14, p. 1194-1199 6 p.

Arabidopsis DUO POLLEN3 Is a Key Regulator of Male Germline Development and Embryogenesis

Brownfield, L., Hafidh, S., Durbarry, A., Khatab, H., Sidorova, A., Doerner, P. & Twell, D., Jul 2009, In: Plant Cell. 21, 7, p. 1940-1956 17 p.

Genotoxic stress response networks at the nexus of plant growth control, life history traits and macroevolution

Doerner, P. & Moore, A., Jul 2008, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 150, 3, p. S142-S142 1 p.

Plant roots: Recycled auxin energizes patterning and growth

Doerner, P., 22 Jan 2008, In: Current Biology. 18, 2, p. R72-R74 3 p.