2024
Sabaté-Cadenas X, Lavalou P, Ross CJ, Chen L, Zielinski D, Vacher S, Ledevin M, Larcher T, Petitjean M, Damy L, Servant N, Bièche I, Ulitsky I, Shkumatava A. Conserved RNA-binding protein interactions mediate syntologous lncRNA functions. bioRxiv, 2024.08.21.605776 (2024).
Kumar V, Sabaté-Cadenas X, Soni I, Stern E, Vias C, Ginsberg D, Romá-Mateo C, Pulido R, Dodel M, Mardakheh FK, Shkumatava A, Shaulian E. The lincRNA JUNI regulates the stress-dependent induction of c-Jun, cellular migration and survival through the modulation of the DUSP14-JNK axis. Oncogene. 2024 May;43(21):1608-1619. doi: 10.1038/s41388-024-03021-4. Epub 2024 Apr 2. PMID: 38565943
2023
Fontana BD, Reichmann F, Tilley CA, Lavalou P, Shkumatava A, Alnassar N, Hillman C, Karlsson KÆ, Norton WHJ, Parker MO. adgrl3.1-deficient zebrafish show noradrenaline-mediated externalizing behaviors, and altered expression of externalizing disorder-candidate genes, suggesting functional targets for treatment. Transl Psychiatry. 2023 Oct 2;13(1):304. doi: 10.1038/s41398-023-02601-4.PMID: 37783687
Sveinsdóttir HS, Christensen C, Þorsteinsson H, Lavalou P, Parker MO, Shkumatava A, Norton WHJ, Andriambeloson E, Wagner S, Karlsson KÆ. Novel non-stimulants rescue hyperactive phenotype in an adgrl3.1 mutant zebrafish model of ADHD. Neuropsychopharmacology. 2023 Jul;48(8):1155-1163. doi: 10.1038/s41386-022-01505-z. Epub 2022 Nov 18. PMID: 36400921
2022
Nawrocka A, Andric V, Shkumatava A. Genetic tools to dissect functions of long noncoding RNAs. IUBMB Life. 2023 Jun;75(6):458-470. doi: 10.1002/iub.2690. Epub 2022 Dec 7. PMID: 36331397
2021
Constanty F, Shkumatava A. lncRNAs in development and differentiation: from sequence motifs to functional characterization. Development. 2021 Jan 13;148(1):dev182741. doi: 10.1242/dev.182741. PMID: 33441380
2020
Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D. SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation. Nature. 2020 Jul 16. doi: 10.1038/s41586-020-2557-5.
Pérez Rico YA, Barillot E, Shkumatava A. Demarcation of topologically associating domains is uncoupled from enriched CTCF binding in developing zebrafish. iScience. 2020 May 22;23(5):101046. doi: 10.1016/j.isci.2020.101046. Epub 2020 Apr 10.
Sabaté-Cadenas X, Shkumatava A. In-cell discovery of RNA-protein interactions. Trends Biochem Sci. 2020 Jan 13. pii: S0968-0004(19)30264-6. doi: 10.1016/j.tibs.2019.12.003.
2019
Graindorge A, Pinheiro I, Nawrocka A, Mallory AC, Tsvetkov P, Gil N, Carolis C, Buchholz F, Ulitsky I, Heard E, Taipale M, Shkumatava A. In-cell identification and measurement of RNA-protein interactions. Nature Communications. 2019 Nov 22;10(1):5317. doi: 10.1038/s41467-019-13235-w.
Lavalou P, Eckert E, Damy L, Constanty F, Majello S, Bitetti A, Graindorge A, Shkumatava A. Strategies for genetic inactivation of long noncoding RNAs in zebrafish. RNA, 2019 May 1. pii: rna.069484.118. doi: 10.1261/rna.069484.118.
2018
Bitetti A, Mallory AC, Carrieri C, Golini E, Carreño Gutierrez H, Perlas E, Pérez-Rico YA, Tocchini-Valentini GP, Enright AJ, Norton WHJ, Mandillo S, O’Carroll D, Shkumatava A. MicroRNA degradation by a conserved target RNA regulates animal behavior. Nat Struct Mol Biol. 2018 Feb; doi: 10.1038/s41594-018-0032-x.
2017
Davis MP, Carrieri C, Saini HK, van Dongen S, Leonardi T, Bussotti G, Monahan JM, Auchynnikava T, Bitetti A, Rappsilber J, Allshire RC, Shkumatava A, O'Carroll D, Enright AJ. Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution. EMBO Rep. 2017 May 12. pii: e201744059. doi: 10.15252/embr.201744059.
Pérez Rico YA, Boeva V, Mallory AC, Bitetti A, Majello S, Barillot E, Shkumatava A. Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes. Genome Res. 2017 Feb;27(2):259-268. doi: 10.1101/gr.203679.115.
2016
Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S, Shkumatava A, Teboul L, Kent J, Joly JS, Concordet JP. Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR. Genome Biol. 2016 Jul 5;17(1):148.
2015
Mallory AC, Shkumatava A. (2015). LncRNAs in vertebrates: Advances and challenges. Biochimie. 2015 Oct; 117:3-14.